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POPTR_0007s06010.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0007s06010.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0007s06010.1Predicted protein (2116 aa)    
Predicted Functional Partners:
POPTR_0018s01540.1
Cellulose synthase (1084 aa)
     
 
  0.574
POPTR_0006s26810.1
Cellulose synthase (1075 aa)
     
 
  0.574
POPTR_0006s19580.1
Cellulose synthase (1036 aa)
     
 
  0.535
POPTR_0018s11290.1
Cellulose synthase (1032 aa)
     
 
  0.528
POPTR_0005s21620.1
Predicted protein (1095 aa)
     
 
  0.504
POPTR_0009s06560.1
Predicted protein (1079 aa)
     
 
  0.494
POPTR_0001s27320.1
Cellulose synthase (1081 aa)
     
 
  0.491
POPTR_0002s25450.1
Predicted protein (1426 aa)
     
   
  0.467
POPTR_0005s08970.1
Putative uncharacterized protein (1096 aa)
     
 
  0.455
POPTR_0003s15140.1
Putative uncharacterized protein POPTRKOR2 [source-UniProtKB/TrEMBL;Acc-B9NBR6_POPTR] (619 aa)
     
   
  0.447
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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