• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0007s07820.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0007s07820.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0007s07820.1Uncharacterized protein (533 aa)    
Predicted Functional Partners:
POPTR_0014s08380.1
Uncharacterized protein (1085 aa)
     
 
  0.959
POPTR_0002s16350.1
annotation not available (972 aa)
       
 
  0.958
POPTR_0002s13650.1
Ras-related GTP-binding family protein (208 aa)
     
 
  0.857
POPTR_0005s07680.1
Ras-related GTP-binding family protein (207 aa)
       
 
  0.854
POPTR_0003s08490.1
annotation not available (179 aa)
       
 
  0.854
POPTR_0001s03090.2
Uncharacterized protein; RAB GTPase homolog H1A (93 aa)
       
 
  0.854
POPTR_0006s02790.1
T-DNA TRANSMISSION DEFECT 8 family protein (718 aa)
     
   
  0.827
POPTR_0016s02330.1
annotation not available (820 aa)
     
   
  0.770
POPTR_0015s04670.1
Uncharacterized protein (320 aa)
           
  0.741
POPTR_0011s15730.1
Uncharacterized protein (1001 aa)
     
   
  0.700
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (6%) [HD]