STRINGSTRING
POPTR_0007s07820.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0007s07820.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0007s07820.1Predicted protein (533 aa)    
Predicted Functional Partners:
POPTR_0014s08380.1
Predicted protein (1085 aa)
     
  0.824
POPTR_0002s16350.1
Annotation not available (972 aa)
       
  0.818
POPTR_0002s13650.1
Predicted protein (208 aa)
     
  0.698
POPTR_0005s07680.1
Predicted protein (207 aa)
       
  0.689
POPTR_0003s08490.1
Uncharacterized protein (179 aa)
       
  0.689
POPTR_0001s03090.1
Uncharacterized protein (93 aa)
       
  0.689
POPTR_0001s11710.1
Uncharacterized protein (114 aa)
     
 
    0.555
POPTR_0016s02330.1
Uncharacterized protein (820 aa)
     
 
    0.547
POPTR_0010s18470.1
Predicted protein (1071 aa)
     
 
    0.533
POPTR_0008s07920.1
Predicted protein (1071 aa)
     
 
    0.532
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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