STRINGSTRING
POPTR_0007s12070.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0007s12070.1" - Putative uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0007s12070.1Putative uncharacterized protein (332 aa)    
Predicted Functional Partners:
POPTR_0010s10350.1
Uncharacterized protein (108 aa)
   
 
 
  0.957
POPTR_0001s11600.1
Putative uncharacterized protein (224 aa)
   
   
  0.894
POPTR_0002s05660.1
Putative uncharacterized protein (262 aa)
   
   
  0.816
POPTR_0005s13860.1
Putative uncharacterized protein (331 aa)
   
 
 
0.810
POPTR_0019s07190.1
Uncharacterized protein (185 aa)
   
 
 
  0.783
POPTR_0107s00220.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002333633.1] (97 aa)
       
 
  0.766
POPTR_0004s03160.1
Putative uncharacterized protein (234 aa)
     
   
  0.754
POPTR_0008s15100.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI11_POPTR] (204 aa)
   
   
  0.750
POPTR_0005s22830.1
Putative uncharacterized protein (262 aa)
   
   
  0.746
POPTR_0006s10040.1
Light-harvesting complex II protein Lhcb4 [source-UniProtKB/TrEMBL;Acc-B9HCM1_POPTR] (285 aa)
     
   
  0.743
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]