STRINGSTRING
POPTR_0008s11090.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0008s11090.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0008s11090.1Predicted protein (222 aa)    
Predicted Functional Partners:
POPTR_0005s24740.1
Predicted protein (341 aa)
       
    0.584
POPTR_0002s03850.1
Predicted protein (341 aa)
       
    0.584
POPTR_0003s19810.1
Uridine 5’-monophosphate synthase family protein (452 aa)
   
        0.495
POPTR_0001s06360.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHV8_POPTR] (475 aa)
   
        0.495
POPTR_1117s00210.1
Uncharacterized protein (399 aa)
         
  0.464
POPTR_1117s00200.1
Uncharacterized protein (314 aa)
         
  0.464
POPTR_0018s06960.1
1-aminocyclopropane-1-carboxylate [source-UniProtKB/TrEMBL;Acc-B9N5G2_POPTR] (446 aa)
         
  0.464
POPTR_0017s14070.1
Predicted protein (146 aa)
         
  0.464
POPTR_0017s04600.1
Aminotransferase family protein [source-UniProtKB/TrEMBL;Acc-B9MYE9_POPTR] (417 aa)
         
  0.464
POPTR_0017s04590.1
Aminotransferase family protein (AMT1), mRNA [source-RefSeq DNA_predicted;Acc-XM_002328010.1] (339 aa)
         
  0.464
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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