STRINGSTRING
POPTR_0008s12830.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0008s12830.1" - Auxin efflux carrier component [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0008s12830.1Auxin efflux carrier component [source-UniProtKB/TrEMBL;Acc-B9HJA9_POPTR]; May act as a component of the auxin efflux carrier (649 aa)    
Predicted Functional Partners:
POPTR_0017s11750.1
Multidrug/pheromone exporter, MDR family, ABC transporter family (1251 aa)
       
 
  0.475
POPTR_0018s01210.1
Flavine-containing monoxygenase [source-UniProtKB/TrEMBL;Acc-B9IKS5_POPTR] (416 aa)
           
  0.424
POPTR_0006s26430.1
Flavine-containing monoxygenase [source-UniProtKB/TrEMBL;Acc-B9H9Q8_POPTR] (411 aa)
           
  0.424
POPTR_0016s09680.1
Multidrug/pheromone exporter, MDR family, ABC transporter family (1324 aa)
       
 
  0.412
POPTR_0006s12590.1
P glycoprotein1 (1357 aa)
       
 
  0.412
POPTR_0005s25800.1
Predicted protein; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (914 aa)
     
   
  0.403
POPTR_0002s02630.1
Predicted protein; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (933 aa)
     
   
  0.403
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]