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POPTR_0009s06060.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0009s06060.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0009s06060.1Uncharacterized protein (271 aa)    
Predicted Functional Partners:
POPTR_0007s14310.1
SHORT VEGETATIVE PHASE family protein (182 aa)
       
 
  0.868
POPTR_0013s10200.1
annotation not available (90 aa)
           
  0.735
HCP903
Histone deacetylase complex protein [source-UniProtKB/TrEMBL;Acc-B9IC42_POPTR] (114 aa)
       
 
  0.723
HCP901
Histone deacetylase complex protein [source-UniProtKB/TrEMBL;Acc-B9GW42_POPTR] (160 aa)
       
 
  0.723
HCP902
Histone deacetylase complex protein [source-UniProtKB/TrEMBL;Acc-B9GPT2_POPTR] (151 aa)
       
 
  0.723
POPTR_0006s04730.1
AGL15 family protein (228 aa)
       
 
0.706
POPTR_0015s13990.1
Uncharacterized protein (260 aa)
           
  0.643
FL
Floricaula/leafy homolog; Probable transcription factor (377 aa)
       
 
  0.635
POPTR_0014s07000.1
annotation not available (133 aa)
     
 
  0.626
POPTR_0005s17950.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002306498.1] (186 aa)
       
 
  0.626
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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