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POPTR_0009s06530.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0009s06530.1" - Carotenoid cleavage dioxygenase 1 family protein in Populus trichocarpa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0009s06530.1Carotenoid cleavage dioxygenase 1 family protein (551 aa)    
Predicted Functional Partners:
POPTR_0014s05590.1
Predicted protein (600 aa)
   
     
  0.775
POPTR_0022s00470.1
Predicted protein (579 aa)
     
   
  0.538
POPTR_0013s03470.1
Predicted protein; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (582 aa)
     
   
  0.538
POPTR_0014s14400.1
Predicted protein (353 aa)
     
   
  0.537
POPTR_0005s05230.1
Predicted protein; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (589 aa)
     
   
  0.518
POPTR_0016s03020.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFC1_POPTR] (457 aa)
           
  0.518
POPTR_0017s02080.1
Predicted protein (435 aa)
     
   
  0.490
POPTR_0005s22740.1
Predicted protein (405 aa)
     
   
  0.485
POPTR_0002s05780.1
Predicted protein (406 aa)
     
   
  0.483
POPTR_0016s03980.1
Predicted protein (504 aa)
     
   
  0.468
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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