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POPTR_0009s07180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0009s07180.1" - Pre-mRNA branch site p14-like family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0009s07180.1Pre-mRNA branch site p14-like family protein (124 aa)    
Predicted Functional Partners:
POPTR_0003s03230.1
Uncharacterized protein (333 aa)
       
 
  0.975
POPTR_0010s08120.1
Uncharacterized protein (87 aa)
     
 
  0.968
POPTR_0008s16780.1
Uncharacterized protein (87 aa)
     
 
  0.968
POPTR_0017s07760.1
Uncharacterized protein (1267 aa)
     
 
  0.964
POPTR_0001s31840.1
Uncharacterized protein (1128 aa)
     
 
  0.964
POPTR_0010s21890.1
Splicing factor family protein (1213 aa)
     
 
  0.937
POPTR_0008s04890.1
Splicing factor family protein (1213 aa)
     
 
  0.937
POPTR_0006s21160.1
Uncharacterized protein (1397 aa)
     
 
  0.937
POPTR_0013s13900.1
Uncharacterized protein (945 aa)
     
 
  0.930
POPTR_0017s01440.1
annotation not available (117 aa)
     
 
  0.917
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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