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POPTR_0009s12770.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0009s12770.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0009s12770.1Predicted protein (350 aa)    
Predicted Functional Partners:
POPTR_0010s17000.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PD90_POPTR] (232 aa)
           
  0.580
POPTR_0008s09180.1
Predicted protein (226 aa)
           
  0.580
POPTR_0004s12040.1
Predicted protein (201 aa)
           
  0.580
POPTR_0001s37020.1
Predicted protein (410 aa)
     
   
  0.555
POPTR_0006s06680.1
Predicted protein (236 aa)
     
        0.544
POPTR_0002s20530.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PD20_POPTR] (471 aa)
   
   
  0.528
POPTR_0018s07400.1
PeroxiredoxinPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAI3_POPTR] (214 aa)
   
        0.528
POPTR_0005s25630.1
Predicted protein (785 aa)
     
   
  0.526
POPTR_0010s10960.1
Predicted protein (706 aa)
           
  0.523
POPTR_0006s13980.1
Peroxiredoxin [source-UniProtKB/TrEMBL;Acc-B9MT31_POPTR] (213 aa)
   
        0.522
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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