• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PtrLHT7 protein (Populus trichocarpa) - STRING interaction network
"PtrLHT7" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PtrLHT7Uncharacterized protein; Lysine/histidine transporter [source-UniProtKB/TrEMBL;Acc-B9HR02_POPTR] (515 aa)    
Predicted Functional Partners:
POPTR_0006s03700.1
Uncharacterized protein; Transmembrane amino acid transporter family protein (431 aa)
           
  0.701
POPTR_0016s07610.1
Casparian strip membrane protein 3; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity) (197 aa)
           
  0.692
POPTR_0010s18910.1
Amino acid transporter (435 aa)
           
  0.617
PtrAUX6
Auxin influx carrier componentPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAI6_POPTR] (491 aa)
           
  0.617
PtrAUX5
Uncharacterized protein; Auxin influx carrier component [source-UniProtKB/TrEMBL;Acc-B9H175_POPTR] (491 aa)
           
  0.617
POPTR_1711s00200.1
annotation not available (172 aa)
           
  0.572
POPTR_0002s11280.1
Amino acid permease, mRNA [source-RefSeq DNA_predicted;Acc-XM_002301093.1] (219 aa)
           
  0.572
POPTR_0008s07540.1
Amino acid transporter (176 aa)
           
  0.470
POPTR_0008s14070.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family (508 aa)
     
        0.469
POPTR_0010s24330.1
Peroxidase; Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily (316 aa)
     
        0.468
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (10%) [HD]