STRINGSTRING
POPTR_0010s21860.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0010s21860.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0010s21860.1Predicted protein (277 aa)    
Predicted Functional Partners:
POPTR_0001s14080.1
Predicted protein (280 aa)
     
   
0.514
POPTR_0009s16160.1
UPF0497 membrane protein 7; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity) (198 aa)
     
        0.489
POPTR_0003s17290.1
Predicted protein (252 aa)
     
   
0.486
POPTR_0006s22510.1
UPF0497 membrane protein 8; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity) (199 aa)
     
        0.484
POPTR_0008s04910.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002312028.1] (242 aa)
     
     
0.470
POPTR_0001s41630.1
Predicted protein (154 aa)
     
        0.470
POPTR_0001s14070.1
Predicted protein (210 aa)
     
     
0.470
POPTR_0006s09040.1
Predicted protein (301 aa)
     
        0.438
POPTR_0016s07620.1
UPF0497 membrane protein 9; Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity) (199 aa)
     
        0.426
POPTR_0015s05450.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9N376_POPTR] (241 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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