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POPTR_0010s23600.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0010s23600.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0010s23600.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002315298.1] (945 aa)    
Predicted Functional Partners:
POPTR_0004s22710.1
Putative uncharacterized proteinRegulatory subunit of cyclin-dependent kinase [source-UniProtKB/TrEMBL;Acc-A9PE37_POPTR]; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (129 aa)
       
      0.915
POPTR_0005s27240.1
Starch branching enzyme I [source-UniProtKB/TrEMBL;Acc-A2TIS0_POPTR] (859 aa)
   
 
  0.874
POPTR_0006s11620.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002326378.1] (540 aa)
   
 
  0.841
POPTR_0006s11600.1
Uncharacterized protein (313 aa)
   
 
  0.837
POPTR_0001s36980.1
Predicted protein (571 aa)
   
 
  0.837
POPTR_0001s36970.1
Predicted protein (64 aa)
   
 
  0.837
POPTR_0001s36960.1
Predicted protein (270 aa)
   
 
  0.837
POPTR_0095s00210.1
Uncharacterized protein (621 aa)
   
   
  0.796
POPTR_0001s34570.1
Hypothetical protein (706 aa)
   
   
  0.792
POPTR_0004s01410.1
Predicted protein (1092 aa)
   
   
  0.777
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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