STRINGSTRING
POPTR_0010s24500.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0010s24500.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0010s24500.1Uncharacterized protein (281 aa)    
Predicted Functional Partners:
POPTR_0010s21390.1
annotation not available (311 aa)
         
  0.950
POPTR_0008s05370.1
annotation not available (219 aa)
         
  0.950
POPTR_0019s06060.1
Uncharacterized protein (1202 aa)
     
 
  0.935
POPTR_0009s12040.1
Uncharacterized protein (172 aa)
           
  0.802
POPTR_0004s07550.1
Uncharacterized protein (526 aa)
           
  0.801
POPTR_0016s07920.1
Uncharacterized protein (308 aa)
         
 
0.800
POPTR_0006s22790.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002308432.1] (233 aa)
         
 
0.800
POPTR_0014s18850.1
Uncharacterized protein (358 aa)
           
  0.741
POPTR_0003s06570.1
Aldehyde dehydrogenase family 7 member a1 turgor responsive family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAP1_POPTR]; Belongs to the aldehyde dehydrogenase family (508 aa)
           
  0.741
POPTR_0001s16730.1
Aldehyde dehydrogenase family 7 member a1 turgor responsive family protein; Belongs to the aldehyde dehydrogenase family (508 aa)
           
  0.741
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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