STRINGSTRING
POPTR_0010s26090.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0010s26090.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0010s26090.1Predicted protein (505 aa)    
Predicted Functional Partners:
POPTR_0015s14650.1
Predicted protein (385 aa)
     
 
  0.952
POPTR_0012s14580.1
Predicted protein (388 aa)
     
 
  0.952
POPTR_0009s08400.1
Predicted protein (384 aa)
     
 
  0.952
POPTR_0001s29300.1
Predicted protein (396 aa)
     
 
  0.952
POPTR_0008s04700.1
Predicted protein (412 aa)
     
 
  0.951
POPTR_0019s11000.1
Predicted protein (468 aa)
     
 
  0.951
POPTR_0013s11280.1
Predicted protein (492 aa)
     
 
  0.951
POPTR_0011s04610.1
Predicted protein (243 aa)
     
 
  0.939
POPTR_0005s25450.1
Predicted protein (215 aa)
     
 
  0.939
POPTR_0005s18060.1
Predicted protein (770 aa)
     
 
  0.939
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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