STRINGSTRING
POPTR_0010s26100.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0010s26100.1" - annotation not available in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0010s26100.1annotation not available (727 aa)    
Predicted Functional Partners:
POPTR_0004s24400.1
RNase L inhibitor family protein (603 aa)
     
 
  0.966
POPTR_0003s03960.1
RNase L inhibitor family protein (611 aa)
     
 
0.916
POPTR_0019s03520.1
annotation not available (1019 aa)
     
 
  0.889
POPTR_0004s23530.1
tRNA synthetase class I family protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1087 aa)
     
      0.887
POPTR_0022s00330.1
tRNA synthetase class I family protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1021 aa)
     
      0.886
POPTR_0013s04340.1
Uncharacterized protein (1070 aa)
     
 
  0.885
POPTR_0387s00220.1
annotation not available (217 aa)
   
        0.865
POPTR_0010s25520.1
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family (384 aa)
   
        0.865
POPTR_0008s01070.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002310916.1]; Belongs to the class-I aminoacyl-tRNA synthetase family (332 aa)
   
        0.865
POPTR_0001s32490.1
Methionyl-tRNA synthetase family protein; Belongs to the class-I aminoacyl-tRNA synthetase family (805 aa)
   
   
  0.829
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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