STRINGSTRING
POPTR_0011s04180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0011s04180.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0011s04180.1Hypothetical protein (155 aa)    
Predicted Functional Partners:
POPTR_0015s01610.1
Predicted protein (605 aa)
   
          0.513
POPTR_0012s14620.1
Predicted protein (533 aa)
   
          0.513
POPTR_0012s02170.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8B2_POPTR] (602 aa)
   
          0.513
POPTR_0005s02260.1
Predicted protein (578 aa)
   
          0.513
POPTR_0002s14660.1
Predicted protein (389 aa)
   
          0.513
POPTR_0015s14760.1
Predicted protein; Acts in the modification of cell walls via demethylesterification of cell wall pectin (516 aa)
   
          0.512
POPTR_0010s11960.1
Predicted protein (531 aa)
   
          0.512
POPTR_0006s13680.1
Predicted protein (541 aa)
   
          0.512
POPTR_0018s05350.1
Pectinesterase (189 aa)
   
          0.511
POPTR_0015s14730.1
Predicted protein (478 aa)
   
          0.511
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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