STRINGSTRING
POPTR_0011s08350.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0011s08350.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0011s08350.1Predicted protein (221 aa)    
Predicted Functional Partners:
POPTR_0013s14900.1
Predicted protein (1041 aa)
     
      0.770
POPTR_0005s23200.1
Putative uncharacterized proteinSilencing group B protein [source-UniProtKB/TrEMBL;Acc-A9PDY2_POPTR] (174 aa)
     
      0.721
POPTR_0002s05290.1
Silencing group B protein [source-UniProtKB/TrEMBL;Acc-B9GSM8_POPTR] (253 aa)
     
      0.721
POPTR_0018s14840.1
Predicted protein (193 aa)
     
   
  0.704
POPTR_0016s06010.1
Predicted protein (419 aa)
     
   
  0.704
POPTR_0006s20890.1
Predicted protein (346 aa)
     
   
  0.704
POPTR_0006s08080.1
Predicted protein (209 aa)
     
   
  0.704
POPTR_0016s02820.1
Predicted protein (183 aa)
     
 
  0.584
POPTR_0015s12890.1
Predicted protein (345 aa)
     
 
  0.584
POPTR_0014s08120.1
Predicted protein (376 aa)
     
 
  0.584
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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