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STRINGSTRING
POPTR_0011s09400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0011s09400.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0011s09400.1annotation not available (216 aa)    
Predicted Functional Partners:
POPTR_0005s10000.1
Tetratricopeptide repeat-containing family protein (256 aa)
           
  0.678
POPTR_0001s38850.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002298885.1] (292 aa)
           
  0.678
POPTR_0003s02950.1
Multidrug resistance-associated protein 6 (1470 aa)
 
 
   
  0.620
DHFR-TS-2
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
   
  0.615
DHFR-TS-1
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
   
  0.615
POPTR_0007s05520.1
annotation not available (372 aa)
     
 
  0.597
POPTR_0005s07770.1
annotation not available (372 aa)
     
 
  0.597
POPTR_0005s02170.1
Uncharacterized protein (94 aa)
           
  0.577
POPTR_0007s07800.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEY6_POPTR] (590 aa)
           
  0.569
POPTR_0005s09600.1
Nucleolin family protein (660 aa)
           
  0.569
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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