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POPTR_0011s12560.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0011s12560.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0011s12560.1Uncharacterized protein (298 aa)    
Predicted Functional Partners:
POPTR_0001s09980.1
Uncharacterized protein; Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (173 aa)
           
  0.680
POPTR_0006s23590.1
Uncharacterized protein (444 aa)
     
   
  0.598
POPTR_0004s01320.1
Glyoxalase I homolog family protein (294 aa)
           
  0.598
POPTR_0001s35490.1
annotation not available (409 aa)
           
  0.598
POPTR_0009s00920.1
Harpin-induced family protein (194 aa)
           
  0.580
POPTR_0011s00270.1
Harpin-induced family protein (223 aa)
           
  0.568
POPTR_0004s02250.1
Harpin-induced family protein (224 aa)
           
  0.568
POPTR_0001s17300.1
Late embryogenesis abundant family protein (104 aa)
           
  0.561
POPTR_0009s01280.1
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione (184 aa)
           
  0.543
POPTR_0004s22470.1
Uncharacterized protein (111 aa)
           
  0.543
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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