STRINGSTRING
POPTR_0011s12560.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0011s12560.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0011s12560.1Predicted protein (298 aa)    
Predicted Functional Partners:
POPTR_0001s02180.1
Predicted protein (642 aa)
           
  0.653
POPTR_0006s23590.1
Predicted protein (444 aa)
           
  0.584
POPTR_0001s36660.1
Predicted protein (143 aa)
     
        0.499
POPTR_0019s09400.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9N1Q0_POPTR] (368 aa)
     
        0.498
POPTR_0003s06080.1
Uncharacterized protein (89 aa)
     
        0.491
POPTR_0010s26030.1
SAUR family protein [source-UniProtKB/TrEMBL;Acc-B9HV11_POPTR] (185 aa)
     
        0.484
POPTR_0009s01790.1
Predicted protein (343 aa)
     
     
0.484
POPTR_0007s11610.1
Predicted protein (537 aa)
     
        0.484
POPTR_0009s04860.1
Predicted protein (405 aa)
     
        0.483
PRX43
Predicted protein; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress (341 aa)
     
        0.483
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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