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STRINGSTRING
HMGB904 protein (Populus trichocarpa) - STRING interaction network
"HMGB904" - High mobility group family [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMGB904High mobility group family [source-UniProtKB/TrEMBL;Acc-B9N5K1_POPTR] (316 aa)    
Predicted Functional Partners:
CHR910
Putative uncharacterized protein CHR910 [source-UniProtKB/TrEMBL;Acc-B9HM80_POPTR] (3347 aa)
     
 
  0.947
CHE901
Uncharacterized protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9HXC3_POPTR] (276 aa)
     
 
  0.946
POPTR_0010s02080.1
annotation not available (1123 aa)
     
 
  0.946
CHR958
Uncharacterized protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9GQA7_POPTR] (2222 aa)
     
 
  0.938
POPTR_0014s08230.1
Uncharacterized protein (2190 aa)
     
 
  0.937
POPTR_0008s14930.1
annotation not available (800 aa)
     
 
  0.937
CHR916
Uncharacterized protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9HV84_POPTR] (1120 aa)
     
 
  0.936
POPTR_0010s02090.1
Uncharacterized protein (1047 aa)
     
 
  0.936
POPTR_0008s14920.1
annotation not available (409 aa)
     
 
  0.936
CHC902
Uncharacterized protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9I3Q3_POPTR] (536 aa)
     
 
  0.935
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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