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POPTR_0011s17180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0011s17180.1" - High mobility group family [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0011s17180.1High mobility group family [source-UniProtKB/TrEMBL;Acc-B9N5K1_POPTR] (316 aa)    
Predicted Functional Partners:
POPTR_0005s20300.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGC1_POPTR] (796 aa)
     
  0.971
POPTR_0002s08110.1
Uncharacterized protein (796 aa)
     
  0.971
POPTR_0015s11250.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9IFF6_POPTR] (427 aa)
     
  0.970
POPTR_0009s11780.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9HRP3_POPTR] (1010 aa)
     
  0.970
POPTR_0004s16070.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9H0P7_POPTR] (1005 aa)
     
  0.969
POPTR_0002s00620.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9GPN7_POPTR] (500 aa)
     
  0.969
POPTR_0012s09870.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9I3Q3_POPTR] (536 aa)
     
  0.966
POPTR_0017s09890.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9N100_POPTR] (408 aa)
     
  0.966
POPTR_0015s10660.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9IFA0_POPTR] (538 aa)
       
  0.965
POPTR_0001s33890.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9GJS7_POPTR] (555 aa)
       
  0.965
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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