STRINGSTRING
POPTR_0011s17240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0011s17240.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0011s17240.1Predicted protein (1205 aa)    
Predicted Functional Partners:
POPTR_0005s16540.1
Predicted protein (2268 aa)
   
  0.985
POPTR_0002s09330.1
Predicted protein (2276 aa)
   
  0.985
POPTR_0006s16110.1
Uncharacterized protein (478 aa)
   
  0.978
POPTR_0130s00210.1
Predicted protein (478 aa)
   
  0.977
POPTR_0018s08770.1
Predicted protein (477 aa)
   
  0.977
POPTR_0019s11590.1
Uncharacterized protein (216 aa)
       
  0.964
POPTR_0013s11970.1
Predicted protein (339 aa)
       
  0.964
POPTR_0016s03060.1
Predicted protein (661 aa)
   
0.960
POPTR_0005s09680.1
Predicted protein (397 aa)
     
  0.952
POPTR_0018s09190.1
Predicted protein (1082 aa)
     
  0.943
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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