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POPTR_0012s01920.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0012s01920.1" - Vesicle transport protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
POPTR_0012s01920.1Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex (109 aa)    
Predicted Functional Partners:
POPTR_0016s03620.1
Phosphatidylinositol 4-phosphate 5-kinase (767 aa)
           
  0.597
POPTR_0005s16040.1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier (62 aa)
           
  0.584
POPTR_0002s08770.1
Uncharacterized protein (83 aa)
           
  0.584
POPTR_0006s12300.1
Phosphatidylinositol-4-phosphate 5-kinase family protein (829 aa)
           
  0.581
POPTR_0002s19030.1
Autophagy-related protein; Belongs to the ATG8 family (122 aa)
     
 
  0.554
POPTR_0003s19540.1
Phosphatidylinositol 4-phosphate 5-kinase (790 aa)
           
  0.542
POPTR_0001s06520.1
Phosphatidylinositol 4-phosphate 5-kinase (763 aa)
           
  0.542
POPTR_0005s16140.1
Phosphatidylinositol 4-phosphate 5-kinase (789 aa)
           
  0.538
POPTR_0002s08880.1
Phosphatidylinositol 4-phosphate 5-kinase (801 aa)
           
  0.538
POPTR_0005s20100.1
F-box family protein (320 aa)
           
  0.536
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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