STRINGSTRING
POPTR_0012s05810.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0012s05810.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0012s05810.1Predicted protein (689 aa)    
Predicted Functional Partners:
POPTR_0005s10280.1
Predicted protein (791 aa)
     
 
  0.614
POPTR_0007s12540.1
Predicted protein (667 aa)
     
      0.606
POPTR_0002s18030.1
Predicted protein (763 aa)
     
  0.606
POPTR_0014s06230.1
Golgi SNARE 12 family protein; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (185 aa)
       
  0.599
POPTR_0014s06220.1
Annotation not available (75 aa)
       
  0.599
POPTR_0003s17920.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8W1_POPTR]; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (228 aa)
       
  0.599
POPTR_0002s14610.1
Predicted protein; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (240 aa)
       
  0.599
POPTR_0001s14820.1
Predicted protein; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor (226 aa)
       
  0.599
POPTR_0006s24200.1
Predicted protein (575 aa)
     
 
  0.599
POPTR_0002s04540.1
Predicted protein (186 aa)
       
      0.595
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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