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POPTR_0013s00620.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0013s00620.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0013s00620.1Uncharacterized protein (150 aa)    
Predicted Functional Partners:
POPTR_0018s09990.1
Uncharacterized protein (66 aa)
     
 
  0.997
POPTR_0011s15920.3
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAK6_POPTR] (286 aa)
     
 
  0.994
POPTR_0001s43060.1
Uncharacterized protein (289 aa)
     
 
  0.994
POPTR_0018s10540.1
annotation not available (59 aa)
     
 
  0.990
POPTR_0006s18800.1
annotation not available (39 aa)
     
 
  0.990
POPTR_0005s27250.1
Small nuclear ribonucleoprotein D3 (132 aa)
     
 
  0.989
POPTR_0002s01120.1
Small nuclear ribonucleoprotein D3 (132 aa)
     
 
  0.989
POPTR_0016s07880.1
Uncharacterized protein (123 aa)
     
 
  0.969
POPTR_0006s22770.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PB05_POPTR] (129 aa)
     
 
  0.969
POPTR_0014s12370.1
Small nuclear ribonucleoprotein D2 (108 aa)
     
 
  0.967
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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