STRINGSTRING
POPTR_0013s03060.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0013s03060.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0013s03060.1Uncharacterized protein (855 aa)    
Predicted Functional Partners:
POPTR_0113s00250.1
Uncharacterized protein; Belongs to the TCP-1 chaperonin family (278 aa)
   
 
      0.458
POPTR_0017s02830.1
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family (188 aa)
   
 
      0.451
POPTR_0780s00210.1
annotation not available (156 aa)
   
          0.448
POPTR_0019s14410.1
Uncharacterized protein (262 aa)
   
          0.448
POPTR_0019s14390.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002325639.1] (252 aa)
   
          0.448
POPTR_0019s14350.1
annotation not available (215 aa)
   
          0.448
POPTR_0019s08820.1
Uncharacterized protein (230 aa)
   
          0.448
POPTR_0019s08790.1
annotation not available (364 aa)
   
          0.448
POPTR_0019s14320.1
Fasciclin-like AGP 15 family protein (214 aa)
   
          0.447
POPTR_0019s08840.1
annotation not available (268 aa)
   
          0.447
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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