• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0013s04430.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0013s04430.1" - Casein kinase i family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0013s04430.1Casein kinase i family protein (458 aa)    
Predicted Functional Partners:
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
 
  0.793
POPTR_0017s00430.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGJ5_POPTR] (467 aa)
     
 
  0.665
POPTR_0010s16490.1
Uncharacterized protein (822 aa)
     
   
  0.610
POPTR_0016s04890.1
Uncharacterized protein (257 aa)
           
  0.576
POPTR_0016s04880.1
annotation not available (120 aa)
           
  0.576
POPTR_0008s00390.1
Serine/threonine-protein phosphatase (303 aa)
     
 
  0.572
POPTR_0010s26110.1
Serine/threonine-protein phosphatase (303 aa)
     
 
  0.563
POPTR_0018s04830.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002324124.1]; Belongs to the protein kinase superfamily (204 aa)
     
 
  0.562
POPTR_0005s25610.1
Uncharacterized protein (502 aa)
       
 
  0.518
POPTR_0002s02960.1
Uncharacterized protein (192 aa)
       
 
  0.518
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (11%) [HD]