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STRINGSTRING
POPTR_0013s08500.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0013s08500.1" - annotation not available in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
POPTR_0013s08500.1annotation not available (105 aa)    
Predicted Functional Partners:
PtrcGrx_C3
Glutaredoxin family protein; Glutaredoxin C3 [source-UniProtKB/TrEMBL;Acc-B9HFC1_POPTR] (134 aa)
           
  0.589
POPTR_0081s00250.1
ATP-NAD kinase family protein (112 aa)
           
  0.572
POPTR_0011s10590.1
ATP-NAD kinase family protein (309 aa)
           
  0.572
POPTR_0007s10600.1
Exonuclease family protein (463 aa)
       
 
  0.542
POPTR_0009s02370.1
Elongation factor 1B alpha-subunit 2 family protein; Belongs to the EF-1-beta/EF-1-delta family (225 aa)
           
  0.470
POPTR_0001s23190.1
Elongation factor 1B alpha-subunit 2 family protein; Belongs to the EF-1-beta/EF-1-delta family (224 aa)
           
  0.470
POPTR_0004s01500.1
Met-10++ like family protein (1030 aa)
           
  0.467
POPTR_0002s24710.1
Uncharacterized protein (551 aa)
           
  0.459
POPTR_0014s07690.1
Uncharacterized protein; Belongs to the DEAD box helicase family (505 aa)
     
 
  0.427
POPTR_0002s15890.1
DEAD/DEAH box helicase family protein; Belongs to the DEAD box helicase family (499 aa)
     
 
  0.427
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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