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STRINGSTRING
POPTR_0014s00860.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0014s00860.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0014s00860.1annotation not available (257 aa)    
Predicted Functional Partners:
POPTR_0015s04630.1
Zinc finger family protein (503 aa)
     
        0.856
POPTR_0012s04390.1
Zinc finger family protein (537 aa)
     
        0.856
POPTR_0007s11210.1
Sulfotransferase; Belongs to the sulfotransferase 1 family (342 aa)
           
  0.788
POPTR_0005s18040.1
Sulfotransferase; Belongs to the sulfotransferase 1 family (342 aa)
           
  0.788
POPTR_0010s16000.1
Zinc knuckle family protein (104 aa)
         
  0.747
POPTR_0010s15990.1
Zinc knuckle family protein (235 aa)
         
  0.747
POPTR_0008s10060.1
Uncharacterized protein (1141 aa)
         
  0.747
POPTR_0016s05200.1
Uncharacterized protein (710 aa)
           
  0.741
POPTR_0006s05550.1
Uncharacterized protein (692 aa)
           
  0.741
POPTR_0001s34080.1
Uncharacterized protein (1001 aa)
           
  0.741
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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