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POPTR_0014s02990.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0014s02990.1" - Chloroplast inner membrane import protein Tic22 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0014s02990.1Chloroplast inner membrane import protein Tic22 (273 aa)    
Predicted Functional Partners:
POPTR_0005s25300.1
Tic20 family protein (272 aa)
     
   
  0.803
POPTR_0004s08560.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002305840.1] (299 aa)
     
   
  0.798
POPTR_0002s03320.2
Tic20 family protein (272 aa)
     
   
  0.798
POPTR_0003s20390.1
Uncharacterized protein (682 aa)
           
  0.798
POPTR_0001s05640.1
Uncharacterized protein (512 aa)
           
  0.798
POPTR_0017s02900.1
Uncharacterized protein (435 aa)
     
   
  0.797
POPTR_0019s14760.1
Chloroplast inner envelope family protein (1013 aa)
     
   
  0.794
POPTR_0013s15040.1
Chloroplast inner envelope family protein (1011 aa)
     
   
  0.790
POPTR_0009s11450.1
Tic62 family protein (573 aa)
     
   
  0.788
POPTR_0004s15750.1
Tic62 family protein (517 aa)
     
   
  0.788
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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