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POPTR_0014s03400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0014s03400.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0014s03400.1Predicted protein (296 aa)    
Predicted Functional Partners:
POPTR_0007s07680.1
Predicted protein (376 aa)
   
 
  0.958
POPTR_0005s09400.1
Hypothetical protein (358 aa)
   
 
  0.954
POPTR_0019s07540.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGQ3_POPTR] (403 aa)
     
 
  0.910
POPTR_0011s11110.1
Uroporphyrinogen decarboxylase (407 aa)
     
 
  0.909
POPTR_0001s40130.1
Predicted protein (407 aa)
     
 
  0.909
POPTR_0013s08080.1
Predicted protein (236 aa)
     
 
  0.907
POPTR_0011s00650.1
Predicted protein (392 aa)
     
   
  0.517
POPTR_0008s20940.1
Predicted protein (418 aa)
     
   
  0.470
POPTR_0009s05400.1
Predicted protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (786 aa)
     
   
  0.456
POPTR_2119s00200.1
Uncharacterized protein (183 aa)
     
   
  0.430
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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