STRINGSTRING
POPTR_0015s05490.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0015s05490.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0015s05490.1Predicted protein (460 aa)    
Predicted Functional Partners:
POPTR_0006s05810.1
Predicted protein (235 aa)
           
  0.524
POPTR_0011s16820.1
Predicted protein (371 aa)
   
        0.513
POPTR_0010s18080.1
Predicted protein (501 aa)
           
  0.512
POPTR_0008s08230.1
Predicted protein (501 aa)
           
  0.512
POPTR_0001s47230.1
Predicted protein (374 aa)
   
        0.502
POPTR_0012s03380.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCC7_POPTR] (107 aa)
   
        0.465
POPTR_0013s07180.1
Predicted protein (131 aa)
   
        0.460
POPTR_0001s31670.1
Predicted protein (93 aa)
   
        0.452
POPTR_0008s08200.1
Hypothetical protein (298 aa)
           
  0.424
POPTR_0001s12360.1
Predicted protein (278 aa)
     
   
  0.403
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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