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POPTR_0015s07900.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0015s07900.1" - Predicted protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0015s07900.1Predicted protein [source-UniProtKB/TrEMBL;Acc-B9IEI5_POPTR] (385 aa)    
Predicted Functional Partners:
POPTR_0015s05960.1
Predicted protein (1177 aa)
     
  0.968
POPTR_0012s01120.1
Predicted protein (1207 aa)
     
  0.968
POPTR_0010s01650.1
Predicted protein (480 aa)
     
  0.790
POPTR_0015s13230.1
Predicted protein (480 aa)
     
  0.779
POPTR_0003s13700.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFG0_POPTR] (687 aa)
     
  0.768
POPTR_0001s10340.1
Predicted protein (687 aa)
     
  0.768
POPTR_0011s04370.1
Predicted protein (261 aa)
     
  0.766
POPTR_0004s03560.1
Predicted protein (908 aa)
     
  0.766
POPTR_0015s04220.1
Predicted protein (255 aa)
       
  0.756
POPTR_0017s07760.1
Predicted protein (1267 aa)
     
  0.751
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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