STRINGSTRING
POPTR_0015s10380.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0015s10380.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0015s10380.1Hypothetical protein (519 aa)    
Predicted Functional Partners:
POPTR_0018s03160.1
Predicted protein (144 aa)
       
  0.922
POPTR_0014s11270.1
Predicted protein (443 aa)
     
 
  0.918
POPTR_0003s21230.1
Predicted protein (200 aa)
     
  0.889
POPTR_0001s04340.1
Predicted protein (200 aa)
     
  0.886
POPTR_0018s02430.1
Predicted protein (675 aa)
     
  0.859
POPTR_0001s35610.1
Predicted protein (231 aa)
     
  0.857
POPTR_0006s27930.1
Predicted protein (675 aa)
     
  0.850
POPTR_0014s14340.1
SET domain protein [source-UniProtKB/TrEMBL;Acc-B9GU95_POPTR] (539 aa)
     
  0.850
POPTR_0002s17180.1
Putative uncharacterized protein (1050 aa)
     
  0.848
POPTR_0012s02120.1
Hypothetical protein (1123 aa)
     
  0.847
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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