STRINGSTRING
POPTR_0015s10560.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0015s10560.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0015s10560.1Predicted protein (326 aa)    
Predicted Functional Partners:
POPTR_0001s12910.1
Cytochrome P450 obtusifoliol 14-alpha-demethylase [source-UniProtKB/TrEMBL;Acc-B9GMU7_POPTR] (488 aa)
     
 
  0.943
POPTR_0003s16010.1
Cytochrome P450 probable obtusifoliol 14-alpha-demethylase [source-UniProtKB/TrEMBL;Acc-B9GZ13_POPTR] (488 aa)
     
 
  0.941
POPTR_0014s06510.1
Predicted protein (305 aa)
     
 
    0.902
POPTR_0003s11570.1
Predicted protein (285 aa)
     
 
    0.902
POPTR_0001s08050.1
Predicted protein (304 aa)
     
 
    0.902
POPTR_0009s06360.1
Predicted protein (346 aa)
     
   
  0.541
POPTR_0006s11740.1
Annotation not available (141 aa)
     
   
  0.464
POPTR_0006s11750.1
Predicted protein (241 aa)
     
   
  0.463
POPTR_0013s08530.1
Predicted protein (725 aa)
       
      0.457
POPTR_0007s06940.1
Predicted protein (1193 aa)
       
      0.457
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (8%) [HD]