STRINGSTRING
POPTR_0015s15030.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0015s15030.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0015s15030.1Predicted protein (186 aa)    
Predicted Functional Partners:
POPTR_0013s04800.1
Predicted protein (1305 aa)
     
  0.988
POPTR_0019s04200.1
Predicted protein (502 aa)
     
  0.988
POPTR_0019s04190.1
Predicted protein (568 aa)
     
  0.988
POPTR_0019s04210.1
Predicted protein (275 aa)
     
  0.988
POPTR_0014s01030.1
Predicted protein (98 aa)
       
  0.976
POPTR_0004s05600.1
Predicted protein (1083 aa)
     
  0.942
POPTR_0017s08430.1
Predicted protein; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament (169 aa)
       
  0.759
POPTR_0010s23050.1
Predicted protein (130 aa)
       
  0.759
POPTR_0008s03840.1
Uncharacterized protein (87 aa)
       
  0.759
POPTR_0001s33420.1
Predicted protein (389 aa)
     
  0.754
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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