STRINGSTRING
POPTR_0016s00540.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0016s00540.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0016s00540.1Predicted protein (397 aa)    
Predicted Functional Partners:
POPTR_0010s20510.1
Predicted protein (316 aa)
     
 
  0.932
POPTR_0019s03470.1
Predicted protein (336 aa)
       
 
  0.929
POPTR_0006s12310.1
Predicted protein (331 aa)
       
      0.705
POPTR_0018s09190.1
Predicted protein (1082 aa)
     
      0.654
POPTR_0002s14080.1
Predicted protein; Plays a complex role in regulating the basal catalytic activity of the alpha subunit (301 aa)
     
      0.637
POPTR_0005s18950.1
Predicted protein (333 aa)
     
      0.634
POPTR_0007s10100.1
Predicted protein (394 aa)
     
      0.624
POPTR_0007s09950.1
Uncharacterized protein (352 aa)
     
      0.624
POPTR_0007s09940.1
Annotation not available (117 aa)
     
      0.624
POPTR_0005s18960.1
Predicted protein (444 aa)
     
      0.624
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (2%) [HD]