STRINGSTRING
POPTR_0016s04280.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0016s04280.1" - Chromatin remodeling complex subunit [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0016s04280.1Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9IHX1_POPTR] (1535 aa)    
Predicted Functional Partners:
POPTR_0004s20930.1
RuvB-like helicase (455 aa)
     
  0.979
POPTR_0009s16220.1
Predicted protein (441 aa)
     
  0.979
POPTR_0012s05840.1
Actin related protein [source-UniProtKB/TrEMBL;Acc-B9I2R4_POPTR] (441 aa)
     
  0.978
POPTR_0015s06310.1
Actin related protein [source-UniProtKB/TrEMBL;Acc-B9N097_POPTR] (378 aa)
     
  0.978
POPTR_0010s08440.1
Actin related protein [source-UniProtKB/TrEMBL;Acc-B9HUA9_POPTR] (414 aa)
     
  0.976
POPTR_0008s16490.1
Uncharacterized protein (354 aa)
     
  0.976
POPTR_0010s20950.1
Actin/actin-like family protein (768 aa)
     
  0.965
POPTR_0016s13490.1
Predicted protein (123 aa)
       
  0.962
POPTR_0016s10950.1
Predicted protein (467 aa)
     
  0.958
POPTR_0006s12040.1
Predicted protein (467 aa)
     
  0.958
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (6%) [HD]