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POPTR_0016s04700.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0016s04700.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0016s04700.1Uncharacterized protein (369 aa)    
Predicted Functional Partners:
POPTR_0005s16540.1
Predicted protein (2268 aa)
   
   
  0.833
POPTR_0002s09330.1
Predicted protein (2276 aa)
   
   
  0.833
POPTR_0003s14190.1
Predicted protein (493 aa)
   
   
  0.794
POPTR_0001s10890.1
Predicted protein (495 aa)
   
   
  0.784
POPTR_0001s00310.1
3-oxoacyl-[acyl-carrier-protein] synthase III (273 aa)
   
   
  0.772
POPTR_0006s07780.1
Biotin carboxylase 1, chloroplastic; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA (528 aa)
   
   
  0.771
POPTR_0018s14250.1
Biotin carboxylase 2, chloroplastic; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA (526 aa)
   
   
  0.765
POPTR_0018s07450.1
Hypothetical protein (554 aa)
   
   
  0.765
POPTR_0011s02750.1
Annotation not available (153 aa)
   
   
  0.765
POPTR_0011s02740.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002316699.1] (350 aa)
   
   
  0.765
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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