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POPTR_0016s04930.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0016s04930.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0016s04930.1Predicted protein (311 aa)    
Predicted Functional Partners:
POPTR_0005s16540.1
Predicted protein (2268 aa)
   
 
  0.819
POPTR_0002s09330.1
Predicted protein (2276 aa)
   
 
  0.819
POPTR_0018s08940.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI99_POPTR] (763 aa)
   
  0.811
POPTR_0008s22410.1
Predicted protein (726 aa)
   
  0.811
POPTR_0018s05150.1
Uncharacterized protein (804 aa)
       
  0.743
POPTR_0006s24570.1
Precursor of carboxylase p-protein 1, glycine decarboxylase complex [source-UniProtKB/TrEMBL;Acc-B9HDN2_POPTR] (1060 aa)
       
  0.743
POPTR_0010s07850.1
Predicted protein (869 aa)
         
  0.654
POPTR_0008s17020.1
Cyclopropane-fatty-acyl-phospholipid synthase family protein (843 aa)
         
  0.654
POPTR_0016s11810.1
Predicted protein (682 aa)
       
      0.645
POPTR_0006s09720.1
Predicted protein (686 aa)
       
      0.645
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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