STRINGSTRING
POPTR_0016s05010.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0016s05010.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0016s05010.1Predicted protein (326 aa)    
Predicted Functional Partners:
POPTR_0016s09590.1
Uncharacterized protein (124 aa)
   
          0.512
POPTR_0011s06380.1
Uncharacterized protein (175 aa)
   
          0.509
POPTR_0006s09990.1
Uncharacterized protein (338 aa)
   
          0.509
POPTR_0067s00240.1
Uncharacterized protein (121 aa)
   
          0.507
POPTR_0004s06200.1
Annotation not available (72 aa)
   
          0.502
POPTR_0084s00250.1
Predicted protein (97 aa)
   
          0.499
POPTR_0039s00310.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002318457.1] (189 aa)
   
          0.499
POPTR_1063s00210.1
Uncharacterized protein (177 aa)
   
          0.494
POPTR_0001s42910.1
Uncharacterized protein (202 aa)
   
          0.490
POPTR_0011s06610.1
Uncharacterized protein (182 aa)
   
          0.488
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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