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POPTR_0016s07150.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0016s07150.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0016s07150.1Uncharacterized protein (368 aa)    
Predicted Functional Partners:
CPC901
Structural maintenance of chromosomes protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9IJY0_POPTR] (1300 aa)
     
 
  0.999
CPE903
Structural maintenance of chromosomes protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFT3_POPTR] (1204 aa)
     
 
  0.987
POPTR_0009s15660.1
annotation not available (256 aa)
     
 
  0.987
CPE902
Structural maintenance of chromosomes protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9H079_POPTR] (1176 aa)
     
 
  0.982
CPE901
Structural maintenance of chromosomes protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9MUI8_POPTR] (1176 aa)
     
 
  0.982
POPTR_0019s15350.1
Uncharacterized protein (725 aa)
     
   
  0.975
POPTR_0009s04560.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.973
POPTR_0001s25490.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
 
  0.973
POPTR_0001s25730.1
Cell division control protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBT1_POPTR]; Belongs to the CDC6/cdc18 family (494 aa)
     
 
  0.971
POPTR_0001s26980.1
Uncharacterized protein (974 aa)
     
 
  0.957
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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