STRINGSTRING
POPTR_0016s07150.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0016s07150.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0016s07150.1Predicted protein (368 aa)    
Predicted Functional Partners:
POPTR_0009s15710.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFT3_POPTR] (1204 aa)
     
  0.980
POPTR_0009s15660.1
Uncharacterized protein (256 aa)
     
  0.980
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.966
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
  0.966
POPTR_0016s00720.1
Hypothetical protein (1340 aa)
     
  0.956
POPTR_0006s27920.1
Uncharacterized protein (979 aa)
     
  0.956
POPTR_0006s00670.1
Predicted protein (1411 aa)
     
  0.956
POPTR_0003s17970.1
Predicted protein (901 aa)
     
  0.956
POPTR_0001s14880.1
Predicted protein (1024 aa)
     
  0.956
POPTR_0018s11810.1
Predicted protein (797 aa)
     
  0.953
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]