STRINGSTRING
POPTR_0017s05450.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0017s05450.1" - GRAS family transcription factor [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0017s05450.1GRAS family transcription factor [source-UniProtKB/TrEMBL;Acc-B9MY72_POPTR] (441 aa)    
Predicted Functional Partners:
POPTR_0006s13130.1
Uncharacterized protein (512 aa)
       
 
  0.682
POPTR_0006s02220.1
GRAS family transcription factor [source-UniProtKB/TrEMBL;Acc-B9HD66_POPTR] (444 aa)
       
 
0.539
POPTR_0016s02030.1
GRAS family transcription factor [source-UniProtKB/TrEMBL;Acc-B9IHC5_POPTR] (413 aa)
       
 
0.535
POPTR_0016s15060.1
GRAS family transcription factor [source-UniProtKB/TrEMBL;Acc-B9IGZ8_POPTR] (803 aa)
       
 
0.531
POPTR_0006s11500.1
GRAS family transcription factor [source-UniProtKB/TrEMBL;Acc-B9MTQ9_POPTR] (847 aa)
       
 
0.529
POPTR_0007s01380.1
Uncharacterized protein (477 aa)
     
 
  0.529
POPTR_0017s04840.1
Zinc finger family protein (463 aa)
       
 
  0.517
RBL901
Retinoblastoma-related protein [source-UniProtKB/Swiss-Prot;Acc-RBR_POPTR]; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (1035 aa)
       
 
  0.500
POPTR_0010s19950.1
WOX5/7B protein [source-UniProtKB/TrEMBL;Acc-Q2A0M2_POPTR] (181 aa)
           
  0.428
POPTR_0008s06560.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HHL7_POPTR] (181 aa)
           
  0.428
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]