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POPTR_0017s08370.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0017s08370.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0017s08370.1Uncharacterized protein (356 aa)    
Predicted Functional Partners:
POPTR_0002s17130.1
Autophagy protein Apg6 (516 aa)
     
 
  0.972
POPTR_0012s07680.1
Phosphatidylinositol 3-kinase family protein; Belongs to the PI3/PI4-kinase family (810 aa)
     
 
  0.918
POPTR_0006s15790.1
Uncharacterized protein (1497 aa)
       
 
  0.898
POPTR_0017s02000.1
Autophagy protein 5; Required for autophagy (345 aa)
     
   
  0.849
POPTR_0001s16980.1
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (94 aa)
           
  0.847
POPTR_0007s11640.1
Uncharacterized protein (195 aa)
           
  0.816
POPTR_0015s09870.1
Transducin family protein (550 aa)
           
  0.802
POPTR_0014s17380.1
Uncharacterized protein (248 aa)
           
  0.799
POPTR_0011s07460.1
annotation not available (453 aa)
     
   
  0.777
POPTR_0004s05470.1
Autophagy conjugation family protein (715 aa)
     
   
  0.777
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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