• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0018s14070.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0018s14070.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0018s14070.1Uncharacterized protein (392 aa)    
Predicted Functional Partners:
POPTR_0006s07660.1
Uncharacterized protein (779 aa)
           
  0.859
HCQL5
Transferase family protein; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein [source-UniProtKB/TrEMBL;Acc-B9IMF9_POPTR] (455 aa)
           
  0.738
HCQL1
Uncharacterized protein; Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein [source-UniProtKB/TrEMBL;Acc-B9N329_POPTR] (451 aa)
           
  0.738
POPTR_0014s08480.1
Uncharacterized protein; Belongs to the protein kinase superfamily (485 aa)
     
   
  0.683
POPTR_0018s14020.2
Uncharacterized protein; Belongs to the peptidase S8 family (817 aa)
     
   
  0.682
POPTR_0006s07580.1
Subtilase family protein; Belongs to the peptidase S8 family (817 aa)
     
   
  0.682
POPTR_0516s00220.1
annotation not available (220 aa)
           
  0.680
POPTR_0018s14420.1
Uncharacterized protein (194 aa)
           
  0.680
POPTR_0018s14130.1
annotation not available (174 aa)
           
  0.680
POPTR_0008s18450.1
Uncharacterized protein (115 aa)
           
  0.680
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (14%) [HD]