Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
annotation not available (552 aa)
Predicted Functional Partners:
Histone deacetylasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFZ1_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (499 aa)
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9MZ37_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (501 aa)
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9IEX4_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (467 aa)
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9I3D0_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (440 aa)
PHD finger family protein (133 aa)
Uncharacterized protein (683 aa)
Uncharacterized protein (687 aa)
RING/FYVE/PHD zinc finger superfamily protein (698 aa)
Uncharacterized protein (647 aa)
annotation not available (172 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar