STRINGSTRING
POPTR_0031s00240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0031s00240.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0031s00240.1annotation not available (552 aa)    
Predicted Functional Partners:
HDA902
Histone deacetylasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFZ1_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (499 aa)
     
 
  0.592
HDA903
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9MZ37_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (501 aa)
     
 
  0.592
HDA908
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9IEX4_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (467 aa)
     
 
  0.458
HDA909
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9I3D0_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (440 aa)
     
 
  0.458
POPTR_0019s09430.1
PHD finger family protein (133 aa)
       
 
  0.440
POPTR_0019s00330.1
Uncharacterized protein (683 aa)
       
 
  0.440
POPTR_0017s02450.1
Uncharacterized protein (687 aa)
       
 
  0.440
POPTR_0013s09300.1
RING/FYVE/PHD zinc finger superfamily protein (698 aa)
       
 
  0.440
POPTR_0010s11170.1
Uncharacterized protein (647 aa)
       
 
  0.440
POPTR_0008s13970.1
annotation not available (172 aa)
       
 
  0.440
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]