STRINGSTRING
POPTR_0157s00230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0157s00230.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0157s00230.1Predicted protein (80 aa)    
Predicted Functional Partners:
POPTR_0019s07820.1
Annotation not available (78 aa)
     
    0.880
POPTR_0019s07810.1
Predicted protein (88 aa)
     
    0.880
POPTR_0010s06750.1
Predicted protein (485 aa)
     
  0.869
POPTR_0008s17790.1
Uncharacterized protein (322 aa)
     
  0.869
POPTR_0021s00710.1
Uncharacterized protein (148 aa)
   
        0.861
POPTR_0015s06860.1
Predicted protein (324 aa)
   
        0.861
POPTR_0012s06750.1
Predicted protein (320 aa)
   
        0.861
POPTR_0011s00550.1
Predicted protein (370 aa)
   
        0.861
POPTR_0004s01470.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI07_POPTR] (375 aa)
   
        0.861
POPTR_0018s08070.1
NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [source-UniProtKB/Swiss-Prot;Acc-NDHK_POPTR] (94 aa)
   
  0.858
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]