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STRINGSTRING
POPTR_0157s00230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0157s00230.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0157s00230.1Uncharacterized protein (80 aa)    
Predicted Functional Partners:
POPTR_0008s07430.1
Uncharacterized protein (726 aa)
     
        0.861
POPTR_0017s08400.1
annotation not available (66 aa)
   
 
  0.743
POPTR_0005s20960.1
annotation not available (210 aa)
     
 
  0.728
POPTR_0001s06710.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBX8_POPTR] (136 aa)
     
 
  0.708
POPTR_0019s07820.1
annotation not available (78 aa)
     
 
  0.638
POPTR_0019s07810.1
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (88 aa)
     
 
  0.638
POPTR_0013s07910.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCJ8_POPTR] (57 aa)
     
 
  0.634
POPTR_0010s06750.1
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain (485 aa)
     
 
  0.628
POPTR_0008s17790.1
annotation not available (322 aa)
     
 
  0.628
ndhA
NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 1 family (68 aa)
   
 
  0.621
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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