STRINGSTRING
POPTR_0293s00230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0293s00230.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0293s00230.1Uncharacterized protein (214 aa)    
Predicted Functional Partners:
POPTR_0004s02370.1
Uncharacterized protein; Belongs to the protein kinase superfamily (403 aa)
   
          0.434
POPTR_0004s02440.1
Uncharacterized protein; Belongs to the protein kinase superfamily (354 aa)
   
          0.431
POPTR_0004s02490.1
annotation not available (332 aa)
   
          0.424
POPTR_0011s11330.1
Uncharacterized protein; Belongs to the protein kinase superfamily (396 aa)
   
          0.423
POPTR_0005s27340.1
Uncharacterized protein; Belongs to the protein kinase superfamily (389 aa)
   
          0.423
POPTR_0004s02420.1
annotation not available (249 aa)
   
          0.422
POPTR_0001s42950.1
Kinase family protein; Belongs to the protein kinase superfamily (382 aa)
   
          0.422
POPTR_0001s40370.1
Uncharacterized protein; Belongs to the protein kinase superfamily (396 aa)
   
          0.422
POPTR_0009s11850.1
Uncharacterized protein; Belongs to the protein kinase superfamily (373 aa)
   
          0.421
POPTR_0004s02460.1
Uncharacterized protein (332 aa)
   
          0.421
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (9%) [HD]