STRINGSTRING
POPTR_1875s00200.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_1875s00200.1" - Uncharacterized protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_1875s00200.1Uncharacterized protein (291 aa)    
Predicted Functional Partners:
POPTR_0005s08650.1
Shikimate kinase [source-UniProtKB/TrEMBL;Acc-B9H5B3_POPTR] (294 aa)
 
  0.983
POPTR_0007s06590.1
Shikimate kinase [source-UniProtKB/TrEMBL;Acc-B9HG21_POPTR] (294 aa)
 
  0.983
POPTR_0002s06190.1
Shikimate kinase [source-UniProtKB/TrEMBL;Acc-B9GT47_POPTR] (265 aa)
 
  0.982
POPTR_0005s11300.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE59_POPTR] (443 aa)
 
 
  0.980
POPTR_0017s08970.1
Shikimate kinase [source-UniProtKB/TrEMBL;Acc-B9N0W2_POPTR] (286 aa)
   
  0.971
POPTR_0005s04490.1
Dehydroquinate dehydratase/ shikimate dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9MZN1_POPTR] (518 aa)
 
   
0.959
POPTR_0013s03070.1
Dehydroquinate dehydratase/ shikimate dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9I835_POPTR] (521 aa)
 
   
0.958
POPTR_0010s02070.1
Dehydroquinate dehydratase/ shikimate dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9HSF2_POPTR] (538 aa)
 
   
0.958
POPTR_0013s03080.1
Hypothetical protein (445 aa)
   
   
 
0.903
POPTR_0014s13020.1
Dehydroquinate dehydratase/ shikimate dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9I9X4_POPTR] (413 aa)
   
   
 
0.902
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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