STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ92585.1Anti-sigma-K factor rskA. (268 aa)    
Predicted Functional Partners:
SFZ92584.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.959
SFZ92598.1
Tfp pilus assembly protein PilF.
  
     0.766
SFZ92600.1
Protein of unknown function.
  
     0.766
SFZ92601.1
Protein of unknown function.
  
     0.756
SFZ92582.1
Superoxide dismutase, Cu-Zn family.
       0.542
SFZ93834.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.522
SFZ89673.1
Protein of unknown function.
  
     0.520
SFZ92587.1
Tetratricopeptide repeat-containing protein.
       0.468
SFZ89377.1
Hypothetical protein.
  
     0.464
SFZ89199.1
Hypothetical protein.
  
     0.458
Your Current Organism:
Flaviramulus basaltis
NCBI taxonomy Id: 369401
Other names: CIP 109091, DSM 18180, F. basaltis, Flaviramulus basaltis Einen and Ovreas 2006 emend. Zhang et al. 2013, strain H35
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