STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP52962.1PFAM: protein of unknown function DUF690. (479 aa)    
Predicted Functional Partners:
ABP53905.1
Hypothetical protein.
 
 
 
 0.881
ABP52959.1
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
 
 
 0.846
ABP53904.1
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase.
 
 
 0.844
ABP52960.1
Hypothetical protein.
 
 
 
 0.839
ABP52951.1
Hypothetical protein.
 
 
 
 0.835
ABP52964.1
PFAM: protein of unknown function DUF909; Belongs to the WXG100 family.
 
 
 0.723
ABP52963.1
Hypothetical protein; Belongs to the WXG100 family.
  
 
 0.716
ABP52952.1
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; Parallel beta-helix repeat.
 
  
 0.674
ABP54473.1
Hypothetical protein.
  
     0.669
ABP52950.1
Hypothetical protein.
 
 
 
 0.651
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.